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cytoscape
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reset
3
votes
4
replies
1.3k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
4.9 years ago
Matthew Thornton
▴ 350
0
votes
1
reply
1.2k
views
WGNA export to external software
WGCNA
network visualization
external software
cytoscape
updated 6.5 years ago by
Peter Langfelder
★ 2.9k • written 6.5 years ago by
je.maxfield
• 0
6
votes
8
replies
8.1k
views
WGCNA export to cytoscape
wgcna
cytoscape
updated 6.2 years ago by
harelarik
▴ 60 • written 6.9 years ago by
2323982403
▴ 60
1
vote
1
reply
233
views
Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 11 weeks ago by
alex.pico
▴ 20 • written 3 months ago by
David R
▴ 90
3
votes
7
replies
1.1k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
10 months ago
Ortega-C
▴ 10
0
votes
1
reply
706
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 3.3 years ago by
alex.pico
▴ 20 • written 3.7 years ago by
ellisjc
• 0
0
votes
0
replies
764
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
13 months ago
gianni.drm
• 0
1
vote
0
replies
1.6k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray
bioconductor
cytoscape
mapfromtranscripts
5.4 years ago
lm795
▴ 10
0
votes
0
replies
1.0k
views
Help with generating network from gene expression data
gene expression
network
cytoscape
6.2 years ago
torgeirous
• 0
9 results • Page
1 of 1
Recent ...
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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