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Comment: Question regarding averaging DESeq2 results.
by
Wolfgang Huber
13k
Dear Eivind, not sure whether this answers your question, here some points: - I think you're onto something when you say "Or would it rath…
Answer: Change my bedgraph file to wig in R
by
ATpoint
★ 1.4k
Check the `rtracklayer` package documentation if you really want to do this in R. Or check the `kentUtils` set of command line tools for co…
Comment: error in function useDataset of biomaRt
by
Basti
▴ 390
Try : ensembl = useMart(biomart="ENSEMBL_MART_ENSEMBL",host="https://uswest.ensembl.org") ensembl = useDataset("hsapiens_gene_ens…
Comment: DESEq2 VST error
by
Muhammad
• 0
thank you. this worked in my case.
Comment: RFC: Inconsistent software license for scran & automated license checks
by
matthias-doering
▴ 30
Dear Levi, Thanks for you observation. For completeness, let's consider what both GPL and AGPL say in Section 13. **[GPL-3][1], excerpt fr…
Votes
Answer: edgeR processAmplicons not recognizing hairpin sequences
Answer: DESEq2 VST error
Comment: Which is the best type of data for correlation or survival analysis
Answer: DEGs from lfcshrink() and results()
Comment: Detection of reference genes by Deseq2
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