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dada2
•
reset
0
votes
14
replies
1.9k
views
Trouble downloading dada2
dada
dada2
13 months ago
elliottchon97
• 0
27
votes
13
replies
16k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 13 months ago by
Yoon Young
• 0 • written 2.8 years ago by
lh290
▴ 60
4
votes
8
replies
3.7k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 2.9 years ago by
Axel Klenk
▴ 990 • written 2.9 years ago by
mschmidt
▴ 10
1
vote
7
replies
17k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 6.7 years ago by
jiangjing_ing
• 0 • written 6.8 years ago by
navlern
• 0
0
votes
5
replies
2.1k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.8 years ago by
fabian.roger08
▴ 10 • written 4.1 years ago by
fabian.roger
• 0
4
votes
4
replies
2.4k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.1 years ago by
benjamin.j.callahan
▴ 50 • written 6.1 years ago by
blastzone.heimerdinger
▴ 20
0
votes
4
replies
1.7k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.2 years ago
ymtan
• 0
0
votes
3
replies
978
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 15 months ago by
Erik Wright
▴ 150 • written 15 months ago by
Nelli
• 0
1
vote
3
replies
1.1k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 24 months ago by
shepherl
3.8k • written 24 months ago by
safiq713
• 0
2
votes
2
replies
395
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
7 months ago
GlycineMax
• 0
0
votes
2
replies
777
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
19 months ago
anasjamshed1994
• 0
1
vote
1
reply
3.5k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Daniel
• 0
0
votes
1
reply
1.7k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 6.6 years ago by
daniel.vantwisk
▴ 50 • written 6.6 years ago by
rggriggs
• 0
0
votes
1
reply
1.9k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
mafusa20
• 0
0
votes
1
reply
732
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
GlycineMax
• 0
0
votes
1
reply
970
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
gradypierroz
• 0
0
votes
0
replies
928
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.0 years ago
anrongloh
• 0
0
votes
0
replies
285
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
5 months ago
Sara
• 0
0
votes
0
replies
739
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
2.6 years ago
Manijeh
• 0
0
votes
0
replies
1.0k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.0 years ago
beginner87
• 0
0
votes
0
replies
947
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
2.6 years ago
Yoan
• 0
0
votes
0
replies
286
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
5 months ago
Sara
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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