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dada2
•
reset
0
votes
0
replies
319
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
6 months ago
Sara
• 0
0
votes
0
replies
316
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
6 months ago
Sara
• 0
2
votes
2
replies
419
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
8 months ago
GlycineMax
• 0
0
votes
14
replies
2.0k
views
Trouble downloading dada2
dada
dada2
14 months ago
elliottchon97
• 0
0
votes
3
replies
1.0k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 16 months ago by
Erik Wright
▴ 150 • written 16 months ago by
Nelli
• 0
0
votes
2
replies
814
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
20 months ago
anasjamshed1994
• 0
1
vote
3
replies
1.2k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 2.0 years ago by
shepherl
3.8k • written 2.0 years ago by
safiq713
• 0
0
votes
4
replies
1.7k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.3 years ago
ymtan
• 0
0
votes
0
replies
758
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
2.7 years ago
Manijeh
• 0
0
votes
0
replies
966
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
2.7 years ago
Yoan
• 0
0
votes
1
reply
758
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 2.9 years ago by
Michael Love
41k • written 2.9 years ago by
GlycineMax
• 0
27
votes
13
replies
16k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 14 months ago by
Yoon Young
• 0 • written 2.9 years ago by
lh290
▴ 60
4
votes
8
replies
3.8k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.0 years ago by
Axel Klenk
★ 1.0k • written 3.0 years ago by
mschmidt
▴ 10
0
votes
0
replies
943
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.0 years ago
anrongloh
• 0
1
vote
1
reply
3.6k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Daniel
• 0
0
votes
0
replies
1.0k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.1 years ago
beginner87
• 0
0
votes
5
replies
2.2k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.9 years ago by
fabian.roger08
▴ 10 • written 4.2 years ago by
fabian.roger
• 0
0
votes
1
reply
1.9k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
mafusa20
• 0
0
votes
1
reply
990
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
gradypierroz
• 0
4
votes
4
replies
2.5k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.1 years ago by
benjamin.j.callahan
▴ 50 • written 6.1 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.7k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 6.7 years ago by
daniel.vantwisk
▴ 50 • written 6.7 years ago by
rggriggs
• 0
1
vote
7
replies
17k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 6.8 years ago by
jiangjing_ing
• 0 • written 6.9 years ago by
navlern
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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