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flowcore transform data.frame

updated 8.1 years ago by Jiang, Mike ★ 1.3k • written 8.1 years ago by Julia ▴ 20

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granges data.frame sort

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by igor ▴ 40

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annotationhub roadmap project rpkm data.frame

7.5 years ago wcstcyx ▴ 30

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data.frame

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by qiuworld.ou • 0

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EdgeR data.frame glmLRT

updated 8.7 years ago by Gordon Smyth 50k • written 8.7 years ago by amoltej ▴ 10

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data.frame tcga reshape data

updated 4.9 years ago by Steve Lianoglou ★ 13k • written 4.9 years ago by mario.zanfardino ▴ 160

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subjunc data.frame myExons Rsubread

updated 10 months ago by ATpoint ★ 4.0k • written 10 months ago by Sukeerthi • 0

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sushi plotBed data.frame

8.0 years ago waqasnayab • 0

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980

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R noiseq data.frame

6.2 years ago aokoro • 0

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data.frame read.table

updated 6.1 years ago by davide risso ▴ 950 • written 6.1 years ago by viviana.marin-esteban • 0

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729

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software error limma data.frame

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by azmir004 • 0

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596

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Rscript data.frame forloop R

3.8 years ago Ankit ▴ 20

12 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Votes

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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