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david
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Bioconductor package to access DAVID tool
DAVID
updated 2.7 years ago by
shepherl
3.8k • written 2.7 years ago by
deepue
▴ 10
0
votes
0
replies
865
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RDAVIDWebService - unable to use getFunctionalAnnotationChart with "count = 0"
rdavidwebservice
david
5.7 years ago
rdalbanus
• 0
13
votes
35
replies
16k
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RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 5.8 years ago by
gevermalc
• 0 • written 8.8 years ago by
Vivek.b
▴ 100
1
vote
4
replies
1.4k
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Upregulation and Downregulation of Gene Ontology terms
microarray
david
differential gene expression
GO
6.1 years ago
seendey16
• 0
0
votes
0
replies
1.3k
views
gene over-representation analysis with custom background
pathway analysis
over-representation analysis
DAVID
pantherDB
consensuspathDB
7.4 years ago
smt8n
• 0
1
vote
0
replies
1.0k
views
How can I connect to DAVID 6.8 Beta through RDAVIDWebService
RDAVIDWebService
david
7.8 years ago
umut.caglar
▴ 10
3
votes
8
replies
10k
views
RDAVIDWebService - Unable to sendViaPost to url etc etc - server time out
software error
david
rdavidwebservice
updated 8.7 years ago by
oops324
• 0 • written 9.1 years ago by
TriS
▴ 200
0
votes
1
reply
1.8k
views
RDAVIDWebService Package - Uploading a gene list using data()
rdavidwebservice
david
differential gene expression
annotation
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
hpw9
• 0
8 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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