Showing : db0 • reset
0
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2
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problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation GO db0 PROcess Annotation GO db0 PROcess
updated 10.7 years ago by ★ 7.2k • written 10.7 years ago by ★ 3.9k
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2
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1.7k
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GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 20
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2
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GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 15.6 years ago by ▴ 220 • written 15.7 years ago by ★ 7.2k
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1
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1.7k
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problem with AnnotationDbi
ChipName db0 affy Category AnnotationDbi ChipName db0 affy Category AnnotationDbi
updated 15.5 years ago by 16k • written 15.5 years ago by ▴ 830
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1
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1.0k
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memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf db0 cdf db0
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 10
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1
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791
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News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.0 years ago kayla.interdonato ▴ 160
0
votes
1
reply
998
views
Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 50
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1
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1.1k
views
building an annotation library from scratch
miRNA Annotation Organism db0 AnnotationDbi microRNA miRNA Annotation Organism db0
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 610
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1
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937
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
3.5 years ago kayla.interdonato ▴ 160
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127
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Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas db0
6 weeks ago bocsci11 • 0
1
vote
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364
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
0
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632
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
13 months ago kayla.interdonato ▴ 160
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0
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915
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hyperGTest, different Results using different annotation packages
Microarray Annotation GO ChipName db0 GOstats Category Microarray Annotation GO ChipName
15.1 years ago Wiebke Iffert ▴ 20
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1.1k
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building an annotation library from scratch
miRNA Annotation db0 AnnotationDbi miRNA Annotation db0 AnnotationDbi
14.5 years ago Guido Hooiveld ★ 3.9k
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0
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1.4k
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450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation db0 probe annotate PROcess GenomicFeatures GenomicRanges Annotation db0 probe
11.5 years ago Marc Carlson ★ 7.2k
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0
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876
views
ka
Annotation db0 Annotation db0
10.6 years ago Guest User ★ 13k
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661
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News: Bioconductor 3.10 db0s are available
news release annotation db0 deadline News
4.5 years ago kayla.interdonato ▴ 160
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0
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660
views
News: Bioconductor 3.11 db0s are available
annotation db0 news release News
4.1 years ago kayla.interdonato ▴ 160
1
vote
0
replies
817
views
News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
3.0 years ago kayla.interdonato ▴ 160
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0
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623
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
19 months ago kayla.interdonato ▴ 160
20 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by marka • 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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