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Showing :
db0
•
reset
1
vote
0
replies
365
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
7 months ago
kayla.interdonato
▴ 160
1
vote
0
replies
817
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.0 years ago
kayla.interdonato
▴ 160
0
votes
1
reply
1.0k
views
memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf
db0
cdf
db0
updated 15.5 years ago by
Wolfgang Huber
★ 13k • written 15.5 years ago by
Don Maszle
▴ 10
0
votes
0
replies
915
views
hyperGTest, different Results using different annotation packages
Microarray
Annotation
GO
ChipName
db0
GOstats
Category
Microarray
Annotation
GO
ChipName
15.1 years ago
Wiebke Iffert
▴ 20
0
votes
2
replies
1.7k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation
GO
Yeast
db0
probe
topGO
AnnotationDbi
Annotation
GO
Yeast
db0
probe
topGO
updated 14.9 years ago by
Marc Carlson
★ 7.2k • written 14.9 years ago by
Gaspard Lequeux
▴ 20
0
votes
0
replies
1.1k
views
building an annotation library from scratch
miRNA
Annotation
db0
AnnotationDbi
miRNA
Annotation
db0
AnnotationDbi
14.5 years ago
Guido Hooiveld
★ 3.9k
0
votes
1
reply
1.1k
views
building an annotation library from scratch
miRNA
Annotation
Organism
db0
AnnotationDbi
microRNA
miRNA
Annotation
Organism
db0
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
James F. Reid
▴ 610
0
votes
0
replies
1.4k
views
450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation
db0
probe
annotate
PROcess
GenomicFeatures
GenomicRanges
Annotation
db0
probe
11.5 years ago
Marc Carlson
★ 7.2k
0
votes
1
reply
998
views
Add new affy organism platform
Microarray
Annotation
Organism
cdf
db0
probe
annotate
affy
Microarray
Annotation
cdf
updated 11.0 years ago by
Marc Carlson
★ 7.2k • written 11.0 years ago by
Ekta Jain
▴ 50
0
votes
2
replies
2.0k
views
problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation
GO
db0
PROcess
Annotation
GO
db0
PROcess
updated 10.7 years ago by
Marc Carlson
★ 7.2k • written 10.7 years ago by
Guido Hooiveld
★ 3.9k
0
votes
0
replies
876
views
ka
Annotation
db0
Annotation
db0
10.6 years ago
Guest User
★ 13k
0
votes
0
replies
662
views
News:
Bioconductor 3.10 db0s are available
news
release
annotation
db0
deadline
News
4.5 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
661
views
News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
4.1 years ago
kayla.interdonato
▴ 160
0
votes
1
reply
937
views
News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
3.5 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
623
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
19 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
791
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
2.0 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
128
views
Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas
db0
6 weeks ago
bocsci11
• 0
0
votes
2
replies
1.3k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 15.7 years ago by
Kort, Eric
▴ 220 • written 15.7 years ago by
Marc Carlson
★ 7.2k
0
votes
0
replies
633
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
13 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
1.7k
views
problem with AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
updated 15.5 years ago by
Hervé Pagès
16k • written 15.5 years ago by
Mark W Kimpel
▴ 830
20 results • Page
1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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