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Showing :
db0
•
reset
1
vote
0
replies
312
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
5 months ago
kayla.interdonato
▴ 160
1
vote
0
replies
790
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
2.9 years ago
kayla.interdonato
▴ 160
0
votes
1
reply
1.0k
views
memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf
db0
cdf
db0
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Don Maszle
▴ 10
0
votes
0
replies
895
views
hyperGTest, different Results using different annotation packages
Microarray
Annotation
GO
ChipName
db0
GOstats
Category
Microarray
Annotation
GO
ChipName
15.0 years ago
Wiebke Iffert
▴ 20
0
votes
2
replies
1.7k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation
GO
Yeast
db0
probe
topGO
AnnotationDbi
Annotation
GO
Yeast
db0
probe
topGO
updated 14.8 years ago by
Marc Carlson
★ 7.2k • written 14.8 years ago by
Gaspard Lequeux
▴ 20
0
votes
0
replies
1.1k
views
building an annotation library from scratch
miRNA
Annotation
db0
AnnotationDbi
miRNA
Annotation
db0
AnnotationDbi
14.4 years ago
Guido Hooiveld
★ 3.9k
0
votes
1
reply
1.0k
views
building an annotation library from scratch
miRNA
Annotation
Organism
db0
AnnotationDbi
microRNA
miRNA
Annotation
Organism
db0
updated 14.4 years ago by
Marc Carlson
★ 7.2k • written 14.4 years ago by
James F. Reid
▴ 610
0
votes
0
replies
1.4k
views
450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation
db0
probe
annotate
PROcess
GenomicFeatures
GenomicRanges
Annotation
db0
probe
11.4 years ago
Marc Carlson
★ 7.2k
0
votes
1
reply
980
views
Add new affy organism platform
Microarray
Annotation
Organism
cdf
db0
probe
annotate
affy
Microarray
Annotation
cdf
updated 10.9 years ago by
Marc Carlson
★ 7.2k • written 10.9 years ago by
Ekta Jain
▴ 50
0
votes
2
replies
1.9k
views
problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation
GO
db0
PROcess
Annotation
GO
db0
PROcess
updated 10.6 years ago by
Marc Carlson
★ 7.2k • written 10.6 years ago by
Guido Hooiveld
★ 3.9k
0
votes
0
replies
846
views
ka
Annotation
db0
Annotation
db0
10.5 years ago
Guest User
★ 13k
0
votes
0
replies
638
views
News:
Bioconductor 3.10 db0s are available
news
release
annotation
db0
deadline
News
4.4 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
641
views
News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
4.0 years ago
kayla.interdonato
▴ 160
0
votes
1
reply
902
views
News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
3.4 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
574
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
17 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
751
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
23 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
62
views
Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas
db0
7 days ago
bocsci11
• 0
0
votes
2
replies
1.3k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 15.6 years ago by
Kort, Eric
▴ 220 • written 15.6 years ago by
Marc Carlson
★ 7.2k
0
votes
0
replies
571
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
12 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
1.7k
views
problem with AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
updated 15.4 years ago by
Hervé Pagès
16k • written 15.4 years ago by
Mark W Kimpel
▴ 830
20 results • Page
1 of 1
Recent ...
Replies
Comment: DEG Filtering
by
Amit
• 0
Hello Gordon, The PCA plot for RMA normalized data shows Mixing of samples. Is it Batch Effect ? Because when I apply ARSyNseq() and again …
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
James W. MacDonald
65k
Let's take a closer look. ``` > library(GEOquery) ## some random data > getGEOSuppFiles("GSE193983") > setwd("GSE193983/") > untar("GSE19…
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Votes
Comment: DEG Filtering
Answer: DEG Filtering
Answer: DEG Filtering
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
Awards
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to
James W. MacDonald
65k
Scholar
to
Gordon Smyth
50k
Popular Question
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rocanja
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