Bioconductor Dba.peakset

Showing : dba.peakset • reset

1

vote

4

replies

888

views

diffbind chip-seq dba.peakset

updated 4.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by Theo ▴ 10

0

votes

1

reply

726

views

diffbind dba.count dba.peakset

updated 6.0 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by pau.rodriguez.sodupe • 0

2

votes

1

reply

958

views

diffbind dba.peakset

updated 7.2 years ago by Rory Stark ★ 5.2k • written 7.2 years ago by fusion.slope ▴ 10

3 results • Page 1 of 1

Recent ...

Replies

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

Answer: Interpret plot from DiffBind

Awards • All

Supporter to JKim • 0