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Comment: DESeq2 : stat or lfcshrink for GSEA analysis
by
ATpoint
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Both are fine, though for many that I talked to the shrunken logFCs are a more intuitive choice and probably a more direct measurement of t…
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Tim Peters
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150
Hi Daniel,
All updated with the dependency dropped. Thanks again for bringing this to my attention.
Cheers,
Tim
Answer: List of Deprecated Packages for Bioc3.18
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shepherl
3.6k
ReportingTools has been fixed and a replacement maintainer found. It has also been undeprecated
Comment: rDGIdb package inconsistency with web interface
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James W. MacDonald
64k
Yes. You went on the beta version and got different results than I (and the package) get when using the existing version. Was that not clea…
Comment: Downloading count matrix for full recount3 dataset
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Nehir
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Hi, did you reach an agreement? Is it still not achievable?
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