updated 3 months ago by
Rory Stark
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written 14 months ago by
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Answer: Diffbind analysis of ATAC-seq data
by
Rory Stark
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This is showing that all of the open chromatin changes are in the same "direction": sites that are open in the `aa` condition only. There a…
Comment: How to get DESeq2 results for a list of genes
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Michael Love
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Just to weigh in here, @atpoint does volunteer a lot of time helping new users on the Bioconductor support site, and I don't see his post a…
Comment: DiffBind: GreyListChIP error: Error: $ operator is invalid for atomic vectors
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Rory Stark
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I would welcome the opportunity to debug this issue if you were willing to send me your DBA object `dba` and a link to a place I could acce…
Comment: During dba(sampleSheet = "samples.csv") step, Error in mergeScores(merged, def,
by
Rory Stark
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I see the `PeakCaller` is set to `macs`, are your peak files the `.xls` files generated by `MACS`?
If they are, it would help to see your…
Answer: how do singleton samples contribute to dispersion estimate in DESeq2?
by
Michael Love
37k
For that type of design, they do not really just much information about the dispersion. But the dispersion estimates are MLE and not based …
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