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dba
•
reset
3
votes
7
replies
2.0k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 6.4 years ago by
Rory Stark
★ 5.2k • written 6.4 years ago by
sylvia
▴ 10
3
votes
3
replies
4.1k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.0 years ago
maria.kondili
▴ 10
1
vote
16
replies
3.6k
views
Error: could not find function "dba"
software error
diffbind
dba
7.5 years ago
mmarins
• 0
0
votes
1
reply
1.2k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
7.5 years ago
rebecca.spokony
• 0
0
votes
0
replies
1.0k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
6.2 years ago
arcucamila
• 0
0
votes
0
replies
701
views
DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
2.4 years ago
opheevallee
• 0
0
votes
1
reply
1.3k
views
DiffBind dba error
DiffBind
dba
R
error
updated 4.7 years ago by
Rory Stark
★ 5.2k • written 4.9 years ago by
annika-helverson
• 0
7 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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