Bioconductor Dds

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DESeqDataSetFromMatrix dds DESeq2

updated 22 days ago by James W. MacDonald 63k • written 23 days ago by naomi.croft • 0

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316

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 10 months ago by James W. MacDonald 63k • written 10 months ago by Enzo.Scifo • 0

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955

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deseq2 cooks distance dds

updated 5.1 years ago by Michael Love 40k • written 5.1 years ago by ipso • 0

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798

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deseq2 dds RPKM

updated 5.4 years ago by Michael Love 40k • written 5.4 years ago by harry.horsnell.17 • 0

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2.1k

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deseq2 rld pheatmap dds

updated 5.9 years ago by Michael Love 40k • written 8.0 years ago by rahel14350 ▴ 10

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4.4k

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deseq2 DDS

updated 6.0 years ago by Michael Love 40k • written 6.0 years ago by rrcutler ▴ 70

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4.3k

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Deseq2 dds confounders

updated 7.8 years ago by Michael Love 40k • written 7.8 years ago by colaneri ▴ 30

7 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

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