Bioconductor Dds

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566

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DESeqDataSetFromMatrix dds DESeq2

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by naomi.croft • 0

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715

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 2.5 years ago by James W. MacDonald 68k • written 2.5 years ago by Enzo.Scifo • 0

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replies

1.4k

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deseq2 cooks distance dds

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by ipso • 0

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1.4k

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deseq2 dds RPKM

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by harry.horsnell.17 • 0

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2.5k

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deseq2 rld pheatmap dds

updated 7.5 years ago by Michael Love 43k • written 9.6 years ago by rahel14350 ▴ 10

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6.0k

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deseq2 DDS

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by rrcutler ▴ 70

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5.3k

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Deseq2 dds confounders

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by colaneri ▴ 30

7 results • Page 1 of 1

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Comment: DESEq2 comparison with mulitple cell types under 2 conditions by boczniak767 ▴ 740

Dear Dr Love, this method is very appealing but does it avoid making not meaningful comparisons like "1KO" vs "2WT" (using example from OP…

Comment: AnnotationHub/ExperimentHub resources backup by James W. MacDonald 68k

You can always grab things from the cache if you want to save or share, but that's not part of the paradigm, so there aren't direct facilit…

Comment: AnnotationHub/ExperimentHub resources backup by igor ▴ 50

Yes, it is cached on your machine, but it wouldn't be cached for your colleagues or for your future self on a different machine. I agree t…

Answer: AnnotationHub/ExperimentHub resources backup by James W. MacDonald 68k

You by definition have a personal backup of important resources - the first time you download something from the `AnnotationHub` or `Experi…

Comment: Check removeBatchEffect effectiveness by massimo • 0

Sorry for the delay, here it is my code which displays the warning message: Normalization: countsdge <- DGEList(counts, timepoint, ge…

Votes

A: Mult-way interaction design in limma

Comment: AnnotationHub/ExperimentHub resources backup

Answer: AnnotationHub/ExperimentHub resources backup

A: conceptual question about FDR, FDR adjusted p-value and q-value

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