Bioconductor De

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1.8k

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limma microarray hugeneST batch effect DE

updated 5.3 years ago by Ryan C. Thompson ★ 7.9k • written 5.3 years ago by svlachavas ▴ 830

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1.4k

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sce markers single cell DE clusters

4.6 years ago ludmi.b • 0

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1.2k

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edger deseq2 rnaseq de

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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2.1k

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deseq rna-seq filtering DE deseq2

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by svlachavas ▴ 830

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3.2k

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batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

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945

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ballgown R RNAseq DE interactions

updated 5.8 years ago by James W. MacDonald 65k • written 5.8 years ago by khill33 • 0

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629

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deseq2 DE

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by lkianmehr • 0

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1.7k

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deseq2 DE DEG

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by hermanapis • 0

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1.3k

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edger design matrix de

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by takumima ▴ 10

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2.7k

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scRNA-seq Seurat DE

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by ilee8 • 0

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982

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deseq2 nested de

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by gaio.transposon • 0

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907

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limma de differential gene expression multi-tissue design multi-level design

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by kdiamanti • 0

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2.2k

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go de enrichment rnaseq goana

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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2.0k

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go DE edger rnaseq glmTreat

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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1.9k

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limma model.matrix de design rnaseq

updated 3.9 years ago by Gordon Smyth 50k • written 3.9 years ago by Will • 0

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1.7k

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monocle cummerbund DE rnaseq

updated 8.8 years ago by ksekine • 0 • written 9.0 years ago by Jon Bråte ▴ 250

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3.4k

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deseq2 DE rnaseq sva combat

updated 8.2 years ago by Michael Love 41k • written 8.2 years ago by mbio.kyle • 0

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1.2k

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limma DE

updated 7.2 years ago by svlachavas ▴ 830 • written 7.2 years ago by Dave • 0

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1.7k

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DESeq2 DE normalization

6.7 years ago mario.keller.1988 ▴ 20

19 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Comment: minfi::read.metharray.exp by Basti ▴ 780

This is indeed correct now !

Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Awards • All

Scholar to ATpoint ★ 4.0k