Bioconductor De

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limma microarray hugeneST batch effect DE

updated 5.2 years ago by Ryan C. Thompson ★ 7.9k • written 5.2 years ago by svlachavas ▴ 830

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1.9k

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limma model.matrix de design rnaseq

updated 3.9 years ago by Gordon Smyth 50k • written 3.9 years ago by Will • 0

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2.2k

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go de enrichment rnaseq goana

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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2.0k

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go DE edger rnaseq glmTreat

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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2.1k

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deseq rna-seq filtering DE deseq2

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by svlachavas ▴ 830

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1.2k

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edger deseq2 rnaseq de

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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1.7k

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DESeq2 DE normalization

6.7 years ago mario.keller.1988 ▴ 20

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deseq2 DE DEG

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by hermanapis • 0

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3.2k

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batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

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1.3k

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edger design matrix de

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by takumima ▴ 10

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1.4k

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sce markers single cell DE clusters

4.6 years ago ludmi.b • 0

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980

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deseq2 nested de

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by gaio.transposon • 0

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1.7k

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monocle cummerbund DE rnaseq

updated 8.8 years ago by ksekine • 0 • written 9.0 years ago by Jon Bråte ▴ 250

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1.2k

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limma DE

updated 7.2 years ago by svlachavas ▴ 830 • written 7.2 years ago by Dave • 0

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2.7k

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scRNA-seq Seurat DE

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by ilee8 • 0

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3.4k

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deseq2 DE rnaseq sva combat

updated 8.2 years ago by Michael Love 41k • written 8.2 years ago by mbio.kyle • 0

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629

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deseq2 DE

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by lkianmehr • 0

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945

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ballgown R RNAseq DE interactions

updated 5.8 years ago by James W. MacDonald 65k • written 5.8 years ago by khill33 • 0

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907

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limma de differential gene expression multi-tissue design multi-level design

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by kdiamanti • 0

19 results • Page 1 of 1

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Awards • All

Scholar to Gordon Smyth 50k