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Answer: Result from GSEA for non-model organism not as expected
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Aastha Kapoor
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I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
Comment: Timely differentially expressed genes
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triZZla
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Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…
Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
by
ATpoint
★
3.6k
What is the output of
below_zero <- apply(miRNA_counts < 0, 1, sum) > 0
miRNA_counts[below_zero,,drop=FALSE]
Comment: Problem loading HDF5Array in R 4.3.2
by
Mike Smith
★
6.2k
Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
by
Aastha Kapoor
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0
After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …
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