Bioconductor DecideTests

Showing : decideTests • reset

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442

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decideTests topTable limma

updated 5 months ago by Gordon Smyth 49k • written 5 months ago by Anna ▴ 20

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414

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edgeR voom decidetests DEG

updated 8 months ago by Gordon Smyth 49k • written 8 months ago by Ankita • 0

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1.0k

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limma eBayes decideTests topTable

updated 3.8 years ago by Gordon Smyth 49k • written 3.8 years ago by irene.roman • 0

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1.1k

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limma stageR decideTests

updated 4.9 years ago by Koen Van den Berge ▴ 180 • written 4.9 years ago by maltethodberg ▴ 170

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677

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limma decidetests

updated 5.1 years ago by Gordon Smyth 49k • written 5.1 years ago by Ryan C. Thompson 7.8k

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1.3k

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limma anova decidetests

updated 5.2 years ago by Gordon Smyth 49k • written 5.2 years ago by mikhael.manurung ▴ 270

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1.1k

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limma decidetests

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by jamie.gearing ▴ 60

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863

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limma decidetests

updated 7.1 years ago by Gordon Smyth 49k • written 7.1 years ago by ahmed.asadik • 0

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1.4k

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limma decidetests

updated 7.2 years ago by Axel Klenk ▴ 990 • written 7.2 years ago by bi_Scholar • 0

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1.2k

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limma decidetests methylation

updated 7.8 years ago by Sean Davis 21k • written 7.8 years ago by kraiczy ▴ 10

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2.9k

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rnaseq decideTests limma qvalue

8.5 years ago anver • 0

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4.6k

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limma B stats decideTests

updated 16 months ago by krushnach80 • 0 • written 8.6 years ago by Elsa • 0

12 results • Page 1 of 1

Recent ...

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Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0

Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …

Comment: enrichGOgradient color change by James W. MacDonald 64k

You could look at my answer and extrapolate from there.

Comment: enrichGOgradient color change by WU • 0

I would like to ask how to make the counts legend black. Thank you.

Answer: Problems with FLOWAI by Alexander • 0

Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…

Answer: Asses fit of variance prior by Gordon Smyth 49k

> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…

Votes

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

How to know if I should use voomWithQualityWeights() or not?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 720

Scholar to Gordon Smyth 49k

Popular Question to Frederik Ziebell ▴ 20