Biostar DecideTests

Showing : decideTests • reset

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250

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limma eBayes decideTests topTable

updated 19 months ago by Gordon Smyth 43k • written 19 months ago by irene.roman • 0

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485

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limma stageR decideTests

updated 2.7 years ago by Koen Van den Berge ▴ 180 • written 2.7 years ago by maltethodberg ▴ 140

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316

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limma decidetests

updated 2.9 years ago by Gordon Smyth 43k • written 2.9 years ago by Ryan C. Thompson 7.6k

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547

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limma anova decidetests

updated 3.0 years ago by Gordon Smyth 43k • written 3.0 years ago by mikhael.manurung ▴ 230

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713

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limma decidetests

updated 3.9 years ago by Aaron Lun ★ 27k • written 3.9 years ago by jamie.gearing ▴ 50

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527

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limma decidetests

updated 4.9 years ago by Gordon Smyth 43k • written 4.9 years ago by ahmed.asadik • 0

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771

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limma decidetests

updated 5.0 years ago by Axel Klenk ▴ 980 • written 5.0 years ago by bi_Scholar • 0

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841

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limma decidetests methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by kraiczy ▴ 10

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2.0k

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rnaseq decideTests limma qvalue

6.3 years ago anver • 0

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2.8k

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limma B stats decideTests

6.4 years ago Elsa • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Comment: "full model matrix is less than full rank" by ATpoint ▴ 840

My best guess is that young and old are not "young" or "old" but include some hidden whitespaces like " young" or "old ". That would then m…

Votes

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

Awards • All

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330