Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
decideTests
•
reset
2
votes
5
replies
3.0k
views
How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
8.8 years ago
anver
• 0
3
votes
2
replies
751
views
Is it ok to use decideTests on linearly dependent contrasts?
limma
decidetests
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
Ryan C. Thompson
★ 7.9k
3
votes
4
replies
936
views
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
limma
decidetests
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
ahmed.asadik
• 0
4
votes
5
replies
4.9k
views
decideTests() options in LIMMA
limma
B stats
decideTests
updated 20 months ago by
krushnach80
• 0 • written 8.9 years ago by
Elsa
• 0
5
votes
6
replies
1.4k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
mikhael.manurung
▴ 270
4
votes
4
replies
1.2k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 5.2 years ago by
Koen Van den Berge
▴ 180 • written 5.2 years ago by
maltethodberg
▴ 170
0
votes
2
replies
670
views
decideTests vs topTable results
decideTests
topTable
limma
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
Anna
▴ 20
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
irene.roman
• 0
0
votes
1
reply
553
views
Decidetest results summary different from results written as .csv file
edgeR
voom
decidetests
DEG
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
Ankita
• 0
3
votes
1
reply
1.2k
views
Limma -decideTests interpretation for M-values
limma
decidetests
methylation
updated 8.1 years ago by
Sean Davis
21k • written 8.1 years ago by
kraiczy
▴ 10
1
vote
3
replies
1.5k
views
limma decideTests results; how to get/sort most significant Genes?
limma
decidetests
updated 7.5 years ago by
Axel Klenk
▴ 990 • written 7.5 years ago by
bi_Scholar
• 0
1
vote
2
replies
1.2k
views
limma decideTests global method with multiple groups
limma
decidetests
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
jamie.gearing
▴ 60
12 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United States,
4 minutes ago
United States,
6 minutes ago
United States,
28 minutes ago
United States,
41 minutes ago
United States,
47 minutes ago
Traffic: 880 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6