Bioconductor DecideTests

Showing : decideTests • reset

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decideTests topTable limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Anna ▴ 20

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edgeR voom decidetests DEG

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Ankita • 0

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limma eBayes decideTests topTable

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by irene.roman • 0

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limma stageR decideTests

updated 5.3 years ago by Koen Van den Berge ▴ 180 • written 5.3 years ago by maltethodberg ▴ 170

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limma decidetests

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Ryan C. Thompson ★ 7.9k

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limma anova decidetests

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by mikhael.manurung ▴ 270

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limma decidetests

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by jamie.gearing ▴ 60

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limma decidetests

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by ahmed.asadik • 0

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limma decidetests

updated 7.6 years ago by Axel Klenk ★ 1.0k • written 7.6 years ago by bi_Scholar • 0

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limma decidetests methylation

updated 8.1 years ago by Sean Davis 21k • written 8.1 years ago by kraiczy ▴ 10

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rnaseq decideTests limma qvalue

8.9 years ago anver • 0

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limma B stats decideTests

updated 20 months ago by krushnach80 • 0 • written 9.0 years ago by Elsa • 0

12 results • Page 1 of 1

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Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

I'm new here, but its better now?

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from > `str(ortologos_filtrados) data.frame':…

Answer: Cannabis OrgDb by Guido Hooiveld ★ 3.9k

> library(AnnotationHub) > hub <- AnnotationHub() snapshotDate(): 2023-10-23 > query(hub, c("cannabis","orgdb") ) …

Votes

Answer: Cannabis OrgDb

DESeq2: How to find out how well the model fits the data?

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

Answer: OrgDb for maize

Awards • All

Scholar to Michael Love 41k