Bioconductor Decidetests

Showing : decidetests • reset

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1.4k

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limma anova decidetests

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by mikhael.manurung ▴ 270

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1.2k

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limma eBayes decideTests topTable

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by irene.roman • 0

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5.0k

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limma B stats decideTests

updated 21 months ago by krushnach80 • 0 • written 9.0 years ago by Elsa • 0

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3.1k

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rnaseq decideTests limma qvalue

8.9 years ago anver • 0

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1.2k

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limma stageR decideTests

updated 5.3 years ago by Koen Van den Berge ▴ 180 • written 5.3 years ago by maltethodberg ▴ 170

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961

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limma decidetests

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by ahmed.asadik • 0

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limma decidetests

updated 7.6 years ago by Axel Klenk ★ 1.0k • written 7.6 years ago by bi_Scholar • 0

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limma decidetests

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by jamie.gearing ▴ 60

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768

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limma decidetests

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Ryan C. Thompson ★ 7.9k

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734

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decideTests topTable limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Anna ▴ 20

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594

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edgeR voom decidetests DEG

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Ankita • 0

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1.2k

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limma decidetests methylation

updated 8.1 years ago by Sean Davis 21k • written 8.1 years ago by kraiczy ▴ 10

12 results • Page 1 of 1

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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0