Bioconductor Decidetests

Showing : decidetests • reset

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720

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decideTests topTable limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Anna ▴ 20

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583

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edgeR voom decidetests DEG

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Ankita • 0

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4.9k

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limma B stats decideTests

updated 20 months ago by krushnach80 • 0 • written 9.0 years ago by Elsa • 0

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1.2k

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limma eBayes decideTests topTable

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by irene.roman • 0

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1.2k

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limma stageR decideTests

updated 5.3 years ago by Koen Van den Berge ▴ 180 • written 5.3 years ago by maltethodberg ▴ 170

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763

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limma decidetests

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Ryan C. Thompson ★ 7.9k

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1.4k

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limma anova decidetests

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by mikhael.manurung ▴ 270

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1.2k

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limma decidetests

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by jamie.gearing ▴ 60

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957

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limma decidetests

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by ahmed.asadik • 0

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1.6k

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limma decidetests

updated 7.6 years ago by Axel Klenk ★ 1.0k • written 7.6 years ago by bi_Scholar • 0

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1.2k

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limma decidetests methylation

updated 8.1 years ago by Sean Davis 21k • written 8.1 years ago by kraiczy ▴ 10

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3.0k

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rnaseq decideTests limma qvalue

8.9 years ago • updated 8.8 years ago anver • 0

12 results • Page 1 of 1

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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k