Bioconductor Decidetests

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1.4k

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limma anova decidetests

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by mikhael.manurung ▴ 270

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5.0k

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limma B stats decideTests

updated 20 months ago by krushnach80 • 0 • written 9.0 years ago by Elsa • 0

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1.2k

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limma stageR decideTests

updated 5.3 years ago by Koen Van den Berge ▴ 180 • written 5.3 years ago by maltethodberg ▴ 170

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764

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limma decidetests

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Ryan C. Thompson ★ 7.9k

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1.2k

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limma decidetests methylation

updated 8.1 years ago by Sean Davis 21k • written 8.1 years ago by kraiczy ▴ 10

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957

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limma decidetests

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by ahmed.asadik • 0

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3.0k

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rnaseq decideTests limma qvalue

8.9 years ago anver • 0

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1.2k

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limma decidetests

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by jamie.gearing ▴ 60

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1.6k

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limma decidetests

updated 7.6 years ago by Axel Klenk ★ 1.0k • written 7.6 years ago by bi_Scholar • 0

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584

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edgeR voom decidetests DEG

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Ankita • 0

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722

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decideTests topTable limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Anna ▴ 20

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1.2k

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limma eBayes decideTests topTable

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by irene.roman • 0

12 results • Page 1 of 1

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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