Showing : deconvolution • reset
0
votes
2
replies
729
views
csSAMfit with covariates
limma microarray deconvolution cell type
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
0
votes
1
reply
2.2k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 150
0
votes
2
replies
1.1k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 deconvolution rnaseq
updated 5.9 years ago by 41k • written 5.9 years ago by • 0
2
votes
2
replies
1.1k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
0
votes
4
replies
1.3k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 30
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution cellmix
8.9 years ago carleshf ▴ 10
0
votes
0
replies
906
views
Best deconvolution method
Deconvolution
2.4 years ago Barista • 0
1
vote
1
reply
1.0k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
6.2 years ago WouterDeCoster ▴ 130
0
votes
0
replies
895
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
6.2 years ago casey.rimland ▴ 150
0
votes
0
replies
866
views
Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.0 years ago marcin.bazyliszek • 0
0
votes
1
reply
649
views
PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
3.8 years ago kavator ▴ 30
11 results • Page 1 of 1
Recent ...
Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Scholar to Robert Castelo ★ 3.2k
Popular Question to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Locations • All
India, 7 minutes ago
France, 9 minutes ago
WEHI, Melbourne, Australia, 20 minutes ago
Ireland, 29 minutes ago
Ghana, 36 minutes ago
Traffic: 488 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6