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deconvolution
•
reset
2
votes
2
replies
1.1k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
2.1 years ago
Hasan Alanya
• 0
0
votes
0
replies
890
views
Best deconvolution method
Deconvolution
2.4 years ago
Barista
• 0
0
votes
1
reply
632
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
3.8 years ago
kavator
▴ 30
0
votes
0
replies
844
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.0 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
708
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
antgomo
• 0
0
votes
4
replies
1.3k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
bruce.moran
▴ 30
0
votes
2
replies
1.1k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
jennyl.smith12
• 0
0
votes
0
replies
876
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.2 years ago
casey.rimland
▴ 150
1
vote
1
reply
988
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
6.2 years ago
WouterDeCoster
▴ 130
0
votes
1
reply
2.1k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
Pauly Lin
▴ 150
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.8 years ago
carleshf
▴ 10
11 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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50k
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