Bioconductor Deepsnv

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deepSNV

updated 5.3 years ago by story.benjamin ▴ 20 • written 5.3 years ago by thestaroceanster • 0

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deepsnv shearwater variant

6.4 years ago dario.beraldi • 0

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deepsnv

8.0 years ago • updated 7.9 years ago thestaroceanster • 0

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deepsnv

8.4 years ago Asma rabe ▴ 290

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deepsnv

updated 9.1 years ago by Valerie Obenchain ★ 6.8k • written 9.1 years ago by shpak.max • 0

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deepSNV

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by Asma rabe ▴ 290

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deepSNV deepSNV

updated 9.7 years ago by Julian Gehring ★ 1.3k • written 9.7 years ago by Asma rabe ▴ 290

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deepSNV deepSNV

updated 9.7 years ago by Dario Strbenac ★ 1.5k • written 9.7 years ago by Asma rabe ▴ 290

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deepSNV deepSNV

updated 9.7 years ago by Dario Strbenac ★ 1.5k • written 9.7 years ago by Asma rabe ▴ 290

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deepSNV deepSNV

9.8 years ago Asma rabe ▴ 290

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deepSNV deepSNV

updated 9.8 years ago by Dario Strbenac ★ 1.5k • written 9.8 years ago by Asma rabe ▴ 290

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deepSNV deepSNV

updated 9.8 years ago by Michael Lawrence ★ 11k • written 9.8 years ago by Asma rabe ▴ 290

12 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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