Bioconductor Degreport

Showing : degreport • reset

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571

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limma DEGreport Volcanoplot

updated 15 months ago by Gordon Smyth 50k • written 16 months ago by Mohammad • 0

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841

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DEGseq clusterProfiler DEGreport

17 months ago Rob • 0

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2.9k

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DEGreport

updated 7 months ago by James W. MacDonald 65k • written 19 months ago by marinaw ▴ 20

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1.6k

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BiocGenerics DESeq2 DEGreport RNASeqData DEG

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by Diya • 0

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3.3k

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DESeq2 RNASeq DEGreport

updated 17 months ago by Michael Love 41k • written 3.1 years ago by Giulia ▴ 10

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917

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RNASeqData DEGreport edgeR

3.2 years ago Wuschel ▴ 10

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9.1k

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DEGreport DegPlot

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by kavator ▴ 30

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877

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DEGreport

updated 4.0 years ago by Lorena Pantano ▴ 120 • written 4.0 years ago by kavator ▴ 30

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2.4k

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DEGreport

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by kavator ▴ 30

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1.6k

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DEGreport deseq2

updated 5.0 years ago by Lorena Pantano ▴ 120 • written 5.1 years ago by lqsdau ▴ 10

10 results • Page 1 of 1

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Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

Answer: limma-voom: Calculate the log-fold change in gene expression within a sample by Gordon Smyth 50k

No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …

Votes

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Answer: Differentially expressed genes in monocle pseudotime

Awards • All

Scholar to Gordon Smyth 50k