Bioconductor Degreport

Showing : degreport • reset

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9.1k

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DEGreport DegPlot

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by kavator ▴ 30

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3.3k

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DESeq2 RNASeq DEGreport

updated 17 months ago by Michael Love 41k • written 3.1 years ago by Giulia ▴ 10

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2.9k

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DEGreport

updated 7 months ago by James W. MacDonald 65k • written 19 months ago by marinaw ▴ 20

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2.4k

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DEGreport

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by kavator ▴ 30

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1.6k

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DEGreport deseq2

updated 5.0 years ago by Lorena Pantano ▴ 120 • written 5.0 years ago by lqsdau ▴ 10

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1.6k

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BiocGenerics DESeq2 DEGreport RNASeqData DEG

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by Diya • 0

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915

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RNASeqData DEGreport edgeR

3.2 years ago Wuschel ▴ 10

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876

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DEGreport

updated 4.0 years ago by Lorena Pantano ▴ 120 • written 4.0 years ago by kavator ▴ 30

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838

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DEGseq clusterProfiler DEGreport

17 months ago Rob • 0

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570

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limma DEGreport Volcanoplot

updated 15 months ago by Gordon Smyth 50k • written 15 months ago by Mohammad • 0

10 results • Page 1 of 1

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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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