Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
degseq
•
reset
0
votes
3
replies
305
views
Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA
RNASeqPower
DEGseq
written 9 weeks ago by
Jonathan
• 0
0
votes
9
replies
1.5k
views
limma fo continous variables
limma
DEGseq
updated 11 months ago by
James W. MacDonald
67k • written 11 months ago by
mia
• 0
0
votes
1
reply
816
views
Why was the number of DEG different between DESeq results and count by myself using excel?
RNASeqData
DEGseq
updated 17 months ago by
ATpoint
★ 4.6k • written 17 months ago by
sybyun419
• 0
0
votes
2
replies
774
views
RNA seq differential expression analysis
DEGseq
RNASeqData
limma
updated 19 months ago by
Gordon Smyth
52k • written 19 months ago by
Shaimaa Gamal
• 0
2
votes
5
replies
1.5k
views
Create the design matrix
DEGseq
edgeR
RNASeq
2.1 years ago
Mohammad
• 0
0
votes
0
replies
1.2k
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
2.2 years ago
Rob
• 0
0
votes
2
replies
992
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 2.2 years ago by
Michael Love
43k • written 2.2 years ago by
CP
• 0
0
votes
2
replies
1.2k
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 2.6 years ago by
swbarnes2
★ 1.4k • written 2.6 years ago by
ac.mainul.mmb
• 0
1
vote
4
replies
1.2k
views
How to figure out the FC value from Limma
limma
DEGseq
DifferentialExpression
updated 2.7 years ago by
Kevin Blighe
★ 4.0k • written 2.7 years ago by
beslinail
• 0
0
votes
1
reply
1.1k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 3.2 years ago by
James W. MacDonald
67k • written 3.2 years ago by
biomyscience
• 0
0
votes
1
reply
851
views
Meta analysis
DEGseq
Metanalysis
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 3.3 years ago by
biomyscience
• 0
1
vote
2
replies
1.0k
views
DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq
DESeq2
Designformula
updated 3.7 years ago by
swbarnes2
★ 1.4k • written 3.7 years ago by
Nicolò
• 0
1
vote
7
replies
1.7k
views
how to make a contrast of uniquely DE genes
edgeR
limma
RNA-seq
DEGseq
3.9 years ago
decppced
• 0
0
votes
3
replies
1.4k
views
DeSeq2- design experiment
rnaseq
degseq
7.3 years ago
laksharikrish
• 0
0
votes
1
reply
1.4k
views
Problem with DEGseq/samWrapper
degseq
updated 7.6 years ago by
ab.tsubaki
• 0 • written 10.1 years ago by
jovel_juan
▴ 30
0
votes
0
replies
1.1k
views
Regarding q-value
DEGseq
DEGseq
11.6 years ago
deepika lakhwani
▴ 170
0
votes
1
reply
1.6k
views
Problems in running easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
updated 12.0 years ago by
delhomme@embl.de
★ 1.2k • written 12.0 years ago by
Guest User
★ 13k
0
votes
3
replies
1.7k
views
Analysis of public GEO datasets - NGS
DEGseq
DEGseq
updated 12.3 years ago by
Aliaksei Holik
▴ 350 • written 12.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
NGS public data analysis
Transcription
DEGseq
Transcription
DEGseq
12.4 years ago
Jill Pleasance
▴ 10
0
votes
1
reply
4.4k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 12.4 years ago by
Gordon Smyth
52k • written 12.4 years ago by
Elena Sorokin
▴ 160
0
votes
3
replies
1.3k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
12.9 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.2k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
13.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.3k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
13.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
14.5 years ago
sunghee OH
▴ 50
0
votes
1
reply
1.2k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 14.5 years ago by
Simon Anders
★ 3.8k • written 14.5 years ago by
sunghee OH
▴ 50
0
votes
8
replies
2.3k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 14.7 years ago by
Naomi Altman
★ 6.0k • written 14.7 years ago by
michael watson IAH-C
★ 3.4k
0
votes
3
replies
1.9k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
updated 15.3 years ago by
Ulrike Goebel
▴ 110 • written 15.3 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
1.2k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
15.3 years ago
Likun Wang
▴ 50
28 results • Page
1 of 1
Recent ...
Replies
Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing
by
delhirussianescortscom
• 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2
by
James W. MacDonald
67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Votes
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
ajglajd gajgflkadfj gl
• 0
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Robert Ivanek
▴ 750
Popular Question
to
shepherl
4.1k
Locations
• All
WEHI, Melbourne, Australia,
1 minute ago
Spain,
1 hour ago
USA,
1 hour ago
Hong Kong,
1 hour ago
India,
2 hours ago
Traffic: 522 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6