Bioconductor Delayedarray

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DESeq2 SummarizedExperiment SparseArray Install DelayedArray

updated 5 months ago by Michael Love 41k • written 5 months ago by eg226 • 0

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DelayedArray TileDBArray

7 months ago sandmann.t ▴ 70

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763

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DelayedArray

updated 7 months ago by Hervé Pagès 16k • written 8 months ago by Koki ▴ 10

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DelayedArray S4Arrays

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by xiuwen.zheng • 0

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SummarizedExperiment S4Arrays DelayedArray

updated 10 months ago by Hervé Pagès 16k • written 11 months ago by Michael Steinbaugh ▴ 90

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HDF5Array DelayedArray

updated 6 months ago by Hervé Pagès 16k • written 2.6 years ago by Koki ▴ 10

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delayedarray rowsum

written 6.6 years ago by maltethodberg ▴ 170

7 results • Page 1 of 1

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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0