Showing : delayedarray • reset
1
vote
5
replies
1.6k
views
rowsum or similar for RleArray?
delayedarray rowsum
written 6.6 years ago by ▴ 170
1
vote
6
replies
763
views
DelayedArray::read_sparse_block
DelayedArray
updated 7 months ago by 16k • written 8 months ago by ▴ 10
1
vote
6
replies
1.7k
views
Unusually long running times for getMeth function since latest release
bsseq delayedarray
updated 6.8 years ago by ▴ 740 • written 6.8 years ago by ★ 1.9k
3
votes
8
replies
3.0k
views
Tutorial: "developing" with HDF5Array
hdf5 DelayedArray summarizedexperiment Tutorial
7.2 years ago Vincent J. Carey, Jr. 6.7k
2
votes
2
replies
1.2k
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 6.1 years ago by ▴ 740 • written 6.1 years ago by ★ 1.3k
0
votes
1
reply
1.1k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 5.7 years ago by 25k • written 5.8 years ago by • 0
8
votes
8
replies
1.7k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray delayedmatrixstats
updated 5.5 years ago by ▴ 740 • written 5.5 years ago by ▴ 170
4
votes
3
replies
1.1k
views
Best way of creating a large RleMatrix
DelayedArray RleMatrix
updated 5.3 years ago by 16k • written 5.4 years ago by ▴ 170
2
votes
1
reply
1.2k
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater BiocSingular DelayedArray
updated 4.9 years ago by ★ 28k • written 4.9 years ago by ▴ 350
1
vote
3
replies
1.7k
views
Troubles with barcodeRanks()
DropletUtils SingleCellExperiement DelayedArray simpleSingleCell
updated 4.9 years ago by ★ 28k • written 4.9 years ago by ▴ 170
2
votes
8
replies
2.4k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray warning installation
updated 3.9 years ago by 16k • written 3.9 years ago by ▴ 10
6
votes
5
replies
974
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 590
2
votes
3
replies
1.1k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64 HDF5Array DelayedArray
updated 2.8 years ago by 16k • written 2.9 years ago by ▴ 10
2
votes
5
replies
901
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 5 months ago by 41k • written 5 months ago by • 0
4
votes
4
replies
1.4k
views
remove NA's from a DelayedArray
delayedarray
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 170
2
votes
6
replies
1.5k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 170
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray rlelist rle
updated 6.5 years ago by ▴ 740 • written 6.5 years ago by ▴ 950
9
votes
8
replies
1.4k
views
Processing time of blockApply and DelayedArray
DelayedArray HDF5Array
updated 2.9 years ago by 16k • written 2.9 years ago by ▴ 40
2
votes
4
replies
1.6k
views
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
SummarizedExperiment S4Arrays DelayedArray
updated 10 months ago by 16k • written 11 months ago by ▴ 90
4
votes
1
reply
2.1k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array SingleCellExperiment DelayedArray
20 months ago merv ▴ 120
1
vote
1
reply
1.0k
views
Could not find function ".read_block_OLD"
DelayedArray S4Arrays
updated 11 months ago by 16k • written 11 months ago by • 0
0
votes
1
reply
1.8k
views
DESeq2 in R 4.2.2
DESeq2 SummarizedExperiment DelayedArray
updated 15 months ago by ★ 4.0k • written 15 months ago by • 0
0
votes
8
replies
1.0k
views
Support of parquet files for on-disk Bioconductor objects
DelayedArray TileDBArray
7 months ago sandmann.t ▴ 70
3
votes
5
replies
1.3k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array DelayedArray
updated 2.9 years ago by 16k • written 2.9 years ago by ▴ 40
4
votes
3
replies
1.1k
views
Temporal directory setting for DelayedArray
HDF5Array DelayedArray
2.8 years ago Koki ▴ 10
4
votes
13
replies
1.8k
views
Speeding up of DelayedArray::write_block()
HDF5Array DelayedArray
updated 6 months ago by 16k • written 2.6 years ago by ▴ 10
2
votes
3
replies
1.6k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array SingleCellExperiment DelayedArray
19 months ago merv ▴ 120
1
vote
2
replies
1.1k
views
Error: C stack usage of HDF5Array
DelayedArray HDF5Array
3.0 years ago Koki ▴ 10
2
votes
6
replies
1.5k
views
"dim<-" against on-disk arrays
DelayedArray TileDBArray HDF5Array
updated 2.9 years ago by 16k • written 3.0 years ago by ▴ 10
2
votes
4
replies
1.1k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array DelayedArray
2.9 years ago Koki ▴ 10
1
vote
1
reply
1.8k
views
Problem installing DelayedArray
DelayedArray
updated 3.2 years ago by 16k • written 3.2 years ago by ★ 8.2k
0
votes
1
reply
730
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
2.9 years ago Koki ▴ 10
0
votes
1
reply
1.8k
views
Installation of package DelayedArray had non-zero exit status
delayedarray
5.8 years ago cristoforo-grasso • 0
0
votes
0
replies
1.0k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array SingleCellExperiment DelayedArray
20 months ago merv ▴ 120
0
votes
1
reply
1.3k
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package dmrfinder delayedarray combine
6.8 years ago br • 0
0
votes
1
reply
870
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray HDF5Array DelayedArray
2.9 years ago Koki ▴ 10
36 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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