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densityplot
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1
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2
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1.1k
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Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
5.7 years ago
peter.fransquet
• 0
1
vote
2
replies
836
views
Stacked density plots not working in for loop (graphical device crashing?)
densityplot
stacked
for loop
5.9 years ago
k.teijgeler
• 0
0
votes
3
replies
1.5k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.2 years ago
annabelle.congras
▴ 10
2
votes
6
replies
2.2k
views
Density plots microarray
microarray
limma
normalization
densityplot
updated 8.1 years ago by
Axel Klenk
▴ 990 • written 8.1 years ago by
Eleni Christodoulou
▴ 150
0
votes
11
replies
2.7k
views
assign the y-scale relation in flowViz densityplot
flowviz
densityplot
updated 8.3 years ago by
magomudw
• 0 • written 9.0 years ago by
peterfoster
▴ 20
5 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
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James W. MacDonald
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
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mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
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Gordon Smyth
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
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It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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