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Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

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LFQ DEPpackage run_app('LFQ') ShinyApps DEP

updated 9 months ago by Ram ▴ 190 • written 10 months ago by d.kozhevnikova ▴ 10

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limma Differentialenrichmentanalysis DEP

updated 6 weeks ago by Gordon Smyth 50k • written 7 weeks ago by Laura • 0

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DEP

updated 5 days ago by shepherl 3.8k • written 5 days ago by Namrata • 0

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Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Comment: How to retrieve gene ontology GO class? by bandconductor • 0

Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

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Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

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