Bioconductor Dependencies

Showing : dependencies • reset

vote

replies

926

views

versions BiocVersion dependencies

updated 3.1 years ago by shepherl 3.8k • written 3.1 years ago by sohitmiglani • 0

votes

914

views

R package dependencies

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by MAPK • 0

votes

1.0k

views

cran package development dependencies

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by bjgrant • 0

vote

854

views

dependencies error

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by ericaugustoito • 0

vote

1.3k

views

package installation dependencies bagfootr bagfoot

updated 6.5 years ago by Sean Davis 21k • written 6.5 years ago by rbronste ▴ 60

vote

replies

2.2k

views

scde ubuntu dependencies R

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by aditya531996 • 0

votes

replies

2.3k

views

deseq2 ubuntu edger dependencies

7.2 years ago aditya531996 • 0

vote

replies

1.7k

views

rhdf5 hdf5 dependencies

updated 7.8 years ago by Mike Smith ★ 6.5k • written 7.8 years ago by thabermann • 0

votes

replies

6.0k

views

parathyroidse package installation dependencies

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by mmalek • 0

votes

2.6k

views

annotationhub dependencies

8.3 years ago dalloliogm ▴ 50

10 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0