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depmap

updated 4.1 years ago by Martin Morgan 25k • written 4.1 years ago by gene_bioconductor ▴ 10

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software error depmap

updated 3.4 years ago by E • 0 • written 3.9 years ago by DannyM • 0

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depmap_copyNumber() depmap

written 11 months ago by davi.vuko • 0

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Comment: Student by deeenes ▴ 60

An alternative is to use [`OmnipathR::translate_ids`][1] (developed by me): ``` library(OmnipathR) library(magrittr) metabolites <- data.…

Comment: Inconsistent result in edgeR by hiroko.ohmiya • 0

Thank you so much! I understand the result after calculating CPMs.

Comment: Harmonizing RNA-seq data of different sourceS(cell vs. tissue) to further conduc by trunnelshine • 0

Integrating RNA-seq data from different sources, such as single cells and bulk tissue, can be challenging due to inherent differences in th…

Answer: Inconsistent result in edgeR by Yunshun Chen ▴ 870

You don't compare gene expression by raw counts. Use something like CPM (count-per-million) at least.

Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by ronin • 0

This was incredibly helpful, thank you so much!

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Answer: Inconsistent result in edgeR

A: MBDseq analysis using qsea package

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