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dese
•
reset
0
votes
2
replies
813
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
2.4 years ago
wilfried.guiblet
• 0
2
votes
17
replies
1.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 10 months ago by
Michael Love
41k • written 10 months ago by
Alina
• 0
2
votes
3
replies
949
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
glennli
• 0
0
votes
2
replies
596
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 2.5 years ago by
Michael Love
41k • written 2.5 years ago by
Dinesh
• 0
1
vote
3
replies
1.3k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
2.2 years ago
aedavids
▴ 20
0
votes
1
reply
84
views
collapseReplicates dimension error
DESeq2
Dese
updated 2 days ago by
Michael Love
41k • written 6 days ago by
Léa
• 0
0
votes
5
replies
3.2k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 22 months ago by
Basti
▴ 750 • written 22 months ago by
Maryam.sed1400
• 0
0
votes
2
replies
831
views
Handling NA's in Deseq2
Dese
DESeq2
10 months ago • updated 9 months ago
Asger Mølgaard
• 0
0
votes
5
replies
747
views
DESeq2 analysis
DESe
DESeq2
8 months ago
Adèle
• 0
3
votes
3
replies
890
views
Merging two plated in R
dese
DESeq2
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
lmrogers34
▴ 10
0
votes
2
replies
201
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
8 weeks ago • updated 7 weeks ago
pl23
• 0
4
votes
4
replies
1.0k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 13 days ago by
feather-W
• 0 • written 11 months ago by
Bernardo
▴ 10
0
votes
2
replies
351
views
Linear Model Fitting and Colinearity
dese
DESeq2
3 months ago
Hugo
• 0
0
votes
2
replies
725
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 3.3 years ago by
Michael Love
41k • written 3.3 years ago by
hpapoli
• 0
0
votes
2
replies
216
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
updated 6 weeks ago by
ATpoint
★ 4.0k • written 6 weeks ago by
Xu
• 0
15 results • Page
1 of 1
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Replies
Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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James W. MacDonald
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Pierre Lindenbaum
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★ 2.0k
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Robert Castelo
★ 3.1k
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