Bioconductor Designmatrix

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subsettingdata edgeR designmatrix

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by prity6459 • 0

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143

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limma designmatrix

updated 17 days ago by Gordon Smyth 50k • written 17 days ago by avery • 0

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998

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DESeq2 designmatrix edgeR limma tidybulk

updated 15 months ago by Michael Love 41k • written 15 months ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

16 months ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.5 years ago by Gordon Smyth 50k • written 2.5 years ago by rebecca.lea.johnston • 0

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designmatrix deseq2 DESeq2

updated 2.5 years ago by swbarnes2 ★ 1.3k • written 2.5 years ago by OST • 0

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designmatrix RNA-seq limma

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

3.2 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

3.2 years ago Debayan ▴ 20

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885

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edgeR pairedsamples designmatrix

3.2 years ago sfidemw • 0

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677

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deseq2 miRNASeq designmatrix Batch

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by anshulmbi • 0

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839

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edger r differentialanalysis rnaseq designmatrix

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Beginner ▴ 60

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Limma designMatrix

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Keifa ▴ 10

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limma microarray designmatrix

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by nashchem • 0

14 results • Page 1 of 1

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Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

I'm new here, but its better now?

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…

Votes

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

DESeq2: How to find out how well the model fits the data?

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

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