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designmatrix
•
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4
votes
6
replies
1.2k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
16 months ago
Abdul
▴ 20
3
votes
5
replies
998
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 15 months ago by
Michael Love
41k • written 15 months ago by
aditya.m
▴ 10
2
votes
4
replies
1.3k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
nashchem
• 0
2
votes
6
replies
1.1k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Keifa
▴ 10
2
votes
4
replies
928
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
3.2 years ago
Debayan
▴ 20
2
votes
4
replies
1.4k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 2.5 years ago by
Gordon Smyth
50k • written 2.5 years ago by
rebecca.lea.johnston
• 0
1
vote
0
replies
613
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
3.2 years ago
nageshprabhu.k
▴ 10
1
vote
2
replies
1.1k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
athief
▴ 20
0
votes
2
replies
839
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Beginner
▴ 60
0
votes
2
replies
677
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
anshulmbi
• 0
0
votes
3
replies
120
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 4 days ago by
Gordon Smyth
50k • written 5 days ago by
prity6459
• 0
0
votes
3
replies
1.1k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 2.5 years ago by
swbarnes2
★ 1.3k • written 2.5 years ago by
OST
• 0
0
votes
2
replies
885
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
3.2 years ago
sfidemw
• 0
0
votes
1
reply
143
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 17 days ago by
Gordon Smyth
50k • written 17 days ago by
avery
• 0
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What do you mean by 'the information'? Do you have things in particular that you want?
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clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
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▴ 10
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