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4
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1.2k
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GenomicRanges::union fails on R devel
devel
GenomicRanges
2.6 years ago
Guillaume Devailly
▴ 60
4
votes
0
replies
647
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
19 months ago
shepherl
3.8k
3
votes
6
replies
1.1k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 13 months ago by
darrelvanhoy
• 0 • written 13 months ago by
shepherl
3.8k
3
votes
18
replies
2.8k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 7 days ago
shepherl
3.8k
3
votes
1
reply
1.2k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
andrew.j.skelton73
▴ 370
2
votes
9
replies
1.6k
views
New annotation package - no response from packages@bioconductor.org
Devel
devel
updated 2.8 years ago by
kayla.interdonato
▴ 160 • written 2.9 years ago by
athief
▴ 20
1
vote
0
replies
817
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
2.1 years ago
shepherl
3.8k
1
vote
0
replies
997
views
News:
Deadline for devel branch 3.8 to pass R CMD build and R CMD check
deadline
release
devel
freeze
News
5.6 years ago
shepherl
3.8k
1
vote
2
replies
872
views
GO.db for Bioconductor 3.17
GO.db
devel
14 months ago
Amanda D. Clark
• 0
1
vote
0
replies
838
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
2.6 years ago
shepherl
3.8k
0
votes
2
replies
848
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
12 months ago • updated 10 months ago
shepherl
3.8k
0
votes
0
replies
794
views
News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
2.7 years ago
shepherl
3.8k
0
votes
0
replies
713
views
News:
Last day to make commit before the RELEASE_3_13
Release
Devel
devel
release
Bioc3.13
2.9 years ago
shepherl
3.8k
0
votes
0
replies
795
views
News:
Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor
release
devel
deadline
3.0 years ago
shepherl
3.8k
0
votes
2
replies
1.5k
views
unable to load shared object Rsamtools.dll':
Devel
updated 2.6 years ago by
Mike Smith
★ 6.5k • written 2.6 years ago by
Franck
• 0
0
votes
0
replies
607
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
2.1 years ago
shepherl
3.8k
0
votes
7
replies
609
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 1 day ago
shepherl
3.8k
0
votes
4
replies
1.1k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
2.1 years ago • updated 18 months ago
shepherl
3.8k
0
votes
0
replies
706
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
18 months ago
shepherl
3.8k
0
votes
2
replies
513
views
No compilation on Windows y compilation on linux
Devel
PackageType
deve
11 months ago • updated 10 months ago
Franck RICHARD
• 0
0
votes
0
replies
756
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
17 months ago
Robert Castelo
★ 3.3k
0
votes
0
replies
554
views
News:
Last day to make commits before Release 3.16
Release
Devel
Bioconductor
release
devel
18 months ago
shepherl
3.8k
0
votes
3
replies
803
views
Package Review/Release Timeline
Devel
updated 22 months ago by
Gordon Smyth
50k • written 22 months ago by
Jonathan
• 0
0
votes
2
replies
737
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
18 months ago
shepherl
3.8k
0
votes
4
replies
699
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.8k
0
votes
3
replies
504
views
Suggested package missing from Development version of Bioconductor
Devel
updated 6 months ago by
shepherl
3.8k • written 7 months ago by
Richard
• 0
0
votes
1
reply
2.0k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
MarcinKosiński
• 0
0
votes
0
replies
1.3k
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
6.5 years ago
shepherl
3.8k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
5.3 years ago
shepherl
3.8k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.2 years ago
shepherl
3.8k
0
votes
1
reply
955
views
News:
Deadline for devel branch 3.9 to pass R CMD build and R CMD check
release
devel
deadline
freeze
News
5.1 years ago
shepherl
3.8k
0
votes
0
replies
806
views
News:
Deadline for commits to current Release 3.9 Branch and Devel 3.10
release
freeze
deadline
devel
News
4.6 years ago
shepherl
3.8k
0
votes
0
replies
878
views
News:
Important Deadlines for RELEASE
release
devel
deadline
News
updated 4.5 years ago by
Martin Morgan
25k • written 4.5 years ago by
shepherl
3.8k
0
votes
0
replies
731
views
News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
4.1 years ago
shepherl
3.8k
0
votes
0
replies
869
views
News:
Import Deadlines for RELEASE 3.11
release
devel
deadline
bioconductor
News
4.0 years ago
shepherl
3.8k
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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