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News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
6 weeks ago • updated 27 days ago
shepherl
3.1k
0
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News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
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Bioconductor
Devel
6 weeks ago
shepherl
3.1k
1
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131
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News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
10 weeks ago • updated 9 weeks ago
shepherl
3.1k
4
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2
replies
358
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GenomicRanges::union fails on R devel
devel
GenomicRanges
7 months ago
Guillaume Devailly
▴ 40
0
votes
2
replies
363
views
unable to load shared object Rsamtools.dll':
Devel
updated 7 months ago by
Mike Smith
★ 5.5k • written 7 months ago by
Franck
• 0
1
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0
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259
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News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
8 months ago
shepherl
3.1k
0
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0
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264
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News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
9 months ago
shepherl
3.1k
2
votes
9
replies
612
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New annotation package - no response from packages@bioconductor.org
Devel
devel
updated 11 months ago by
kayla.interdonato
140 • written 11 months ago by
athief
▴ 10
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Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
by
James W. MacDonald
59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
Comment: Handling of missing values in limma
by
AyHi
• 0
Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files
by
lesefo6448
• 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Comment: featureCounts: 0% successfully assigned fragments
by
ATpoint
★ 1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Comment: champ.SVD() error, assumes standard class() function will return single string
by
Basti
▴ 280
What is class(`yourbeta`) ?
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
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