Bioconductor Devel

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Deprecation devel Bioconductor Devel

9 months ago • updated 16 hours ago shepherl 3.8k

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Release Devel ExperimentData Software

6 weeks ago • updated 5 days ago shepherl 3.8k

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Release Devel release devel

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by shepherl 3.8k

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Devel

updated 6 months ago by shepherl 3.8k • written 6 months ago by Richard • 0

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Devel PackageType deve

11 months ago • updated 10 months ago Franck RICHARD • 0

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Bioconductor Deprecation Devel devel

12 months ago • updated 10 months ago shepherl 3.8k

6 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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