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[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
5.4 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.3k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 5.5 years ago by
shepherl
3.8k • written 5.5 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.1k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.5k
views
GIT: Fetch package source from remote upstream
git
github
developers
updated 6.3 years ago by
nitesh.turaga
▴ 140 • written 6.3 years ago by
wirth
• 0
1
vote
3
replies
1.9k
views
Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
6.6 years ago • updated 6.5 years ago
rtraborn
• 0
1
vote
1
reply
832
views
flowDensity got downgraded
flowDensity
developers
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
mmalek
• 0
3
votes
2
replies
1.1k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
mlbendall
• 0
1
vote
2
replies
1.6k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.3 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
anthonycolombo60
• 0
0
votes
1
reply
2.0k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
MarcinKosiński
• 0
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.4 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
MarcinKosiński
• 0
7
votes
5
replies
2.9k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 8.5 years ago by
Laurent Gatto
1.6k • written 8.6 years ago by
Mark Dunning
★ 1.1k
3
votes
1
reply
1.2k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
andrew.j.skelton73
▴ 370
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
8.9 years ago
flying-sheep
▴ 10
0
votes
0
replies
2.1k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
9.5 years ago
Wolfgang Huber
★ 13k
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Comment: DESeq2 setting significant p-value
by
Dev
• 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
by
jacques.imbert
• 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
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Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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