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[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
6.0 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.4k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 6.1 years ago by
shepherl
4.1k • written 6.1 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.3k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.5 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.7k
views
GIT: Fetch package source from remote upstream
git
github
developers
updated 6.8 years ago by
nitesh.turaga
▴ 140 • written 6.8 years ago by
wirth
• 0
1
vote
3
replies
2.1k
views
Access to github repository- how does one know if their ssh public key was accepted
github
package updates
developers
package development
7.1 years ago
rtraborn
• 0
1
vote
1
reply
976
views
flowDensity got downgraded
flowDensity
developers
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
mmalek
• 0
3
votes
2
replies
1.3k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
mlbendall
• 0
1
vote
2
replies
1.8k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
anthonycolombo60
• 0
0
votes
1
reply
2.2k
views
Is there a way to change the name of R package that is already published on bioconductor?
r
developers
devel
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
MarcinKosiński
• 0
1
vote
3
replies
1.8k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
MarcinKosiński
• 0
7
votes
5
replies
3.2k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 9.0 years ago by
Laurent Gatto
1.6k • written 9.2 years ago by
Mark Dunning
★ 1.1k
3
votes
1
reply
1.4k
views
Reverse the effect of useDevel()
bioconductor
devel
developers
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
andrew.j.skelton73
▴ 370
5
votes
3
replies
1.8k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.5 years ago
flying-sheep
▴ 10
0
votes
0
replies
2.2k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
10.1 years ago
Wolfgang Huber
★ 13k
14 results • Page
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Recent ...
Replies
Answer: single cell RNA seq pseudobulk batch correction
by
James W. MacDonald
67k
You can exclude the females from the non-responders.
Answer: Normalized counts to be used in decoupleR from deseq2 results
by
James W. MacDonald
67k
No, you never use normalized counts for anything but plotting. Can you point out the example that uses normalized counts?
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
If you care to know more about the process, there is a [GitHub with all the code][1]. It's pretty complicated though - the readme alone is …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Thanks; I did not know which file exactly is being used. Good catch regarding the discrepancy between the 2 web pages. I will get in touch …
Answer: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
The data for the `OrgDb` packages comes directly from NCBI, and in this case the symbols come from the gene_info.gz file you [can get from …
Votes
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
Comment: limma technical repeat correction
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