Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
diffBind
•
reset
0
votes
2
replies
134
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
6 days ago • updated 4 days ago
Sam
▴ 10
0
votes
1
reply
106
views
Exact same results in Diffbind with different normalization methods
DiffBind
6 days ago • updated 1 day ago
red_bricks
▴ 50
0
votes
1
reply
226
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind
ATACSeq
7 weeks ago
isaromero8888
• 0
0
votes
0
replies
147
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind
edgeR
ATACSeq
DESeq2
8 weeks ago
Jawahar
• 0
0
votes
0
replies
112
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl
ChIPSeq
DiffBind
8 weeks ago
frueher
• 0
0
votes
0
replies
127
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
9 weeks ago
Aswathy
• 0
0
votes
0
replies
163
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind
CUT&Tag
10 weeks ago
Hai
• 0
0
votes
0
replies
184
views
ATACseq- Counts around TSS plot
DiffBind
ATACSeq
11 weeks ago
inna.gur
• 0
0
votes
1
reply
862
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 11 weeks ago by
qq809825706
• 0 • written 6 months ago by
Mark
• 0
0
votes
2
replies
284
views
In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 3 months ago by
Sam
▴ 10
1
vote
2
replies
256
views
Inconsistent results in DiffBind
DiffBind
3 months ago
Sam
▴ 10
1
vote
1
reply
271
views
DiffBind getting Fold values of near 0
DiffBind
DESeq2
updated 3 months ago by
ATpoint
★ 3.9k • written 3 months ago by
Miquel
• 0
0
votes
0
replies
272
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw
ChIPseq
DiffBind
4 months ago
jared.andrews07
▴ 30
0
votes
0
replies
327
views
DiffBind dba.count() crash/can't finish problems
dba.count
DiffBind
ATACSeq
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
sophie.hfliu
• 0
2
votes
4
replies
1.2k
views
DiffBind returns different grey lists every time I run dba.blacklist even if I set seed.
DiffBind
updated 5 months ago by
Matt Eldridge
• 0 • written 5 months ago by
r.murakami
• 0
2
votes
2
replies
415
views
DiffBind dba.analyze function doesn't have bSubControl option anymore?
DiffBind
5 months ago
r.murakami
• 0
1
vote
1
reply
378
views
DiffBind - how to prep the sample matrix when multiple bam files are used by MACS2's -t and -c param?
DiffBind
chipseq
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
lin.pei26
• 0
3
votes
7
replies
783
views
Genes in open chromatin region
ChIPpeakAnno
DiffBind
written 6 months ago by
Chris
• 0
0
votes
3
replies
513
views
diffbind analyze for wheat
DiffBind
updated 19 days ago by
Igor
• 0 • written 6 months ago by
zgyu12
• 0
0
votes
1
reply
489
views
Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
6 months ago
Mark
• 0
1
vote
2
replies
538
views
DiffBind plot.profile y-axis unit and individual locus value on the heatmap
DiffBind
7 months ago • updated 6 months ago
Junsik
• 0
0
votes
2
replies
403
views
DiffBind error
DiffBind
updated 6 months ago by
Rory Stark
★ 5.1k • written 7 months ago by
M.Vukic
• 0
0
votes
2
replies
729
views
DiffBind dropping peaks in ATAC-seq data
DiffBind
ATACSeq
updated 7 months ago by
Malcolm Cook
★ 1.6k • written 7 months ago by
Nebat
• 0
1
vote
1
reply
1.7k
views
Help with error DiffBind
DiffBind
updated 7 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
Chris
• 0
1
vote
1
reply
1.9k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 7 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
bhandary.8590
▴ 20
0
votes
5
replies
2.6k
views
diffbind
DiffBind
chipseq
updated 7 months ago by
Rory Stark
★ 5.1k • written 7 months ago by
ANAMIKA
• 0
0
votes
3
replies
528
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config
DiffBind
Error
updated 7 months ago by
Rory Stark
★ 5.1k • written 7 months ago by
jason.kost
• 0
0
votes
5
replies
1.0k
views
DiffBind handling of replicates and consensus
diffbind
updated 5 months ago by
Rory Stark
★ 5.1k • written 4.1 years ago by
Jim
• 0
0
votes
4
replies
733
views
diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
8 months ago
Theo
• 0
1
vote
2
replies
608
views
DiffBind Using edgeR: TMM Normalisation produces identical results to Library Size normalisation
DiffBind
updated 8 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
Stevie Pederson
• 0
0
votes
1
reply
489
views
DiffBind output issues
DiffBind
updated 8 months ago by
Rory Stark
★ 5.1k • written 9 months ago by
David.Atkinson2
• 0
1
vote
2
replies
680
views
Interpret plots from DiffBind
DiffBind
9 months ago • updated 8 months ago
Chris
• 0
2
votes
3
replies
550
views
Sample sheet file for DiffBind
DiffBind
updated 9 weeks ago by
meghanapple2
• 0 • written 9 months ago by
Chris
• 0
4
votes
4
replies
724
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
9 months ago • updated 8 months ago
bhandary.8590
▴ 20
0
votes
0
replies
375
views
Help with error running DiffBind
DiffBind
9 months ago
Chris
• 0
1
vote
7
replies
1.0k
views
Diffbind "No genome detected"
DiffBind
updated 3 months ago by
James W. MacDonald
65k • written 9 months ago by
kyliecode
• 0
7
votes
13
replies
1.7k
views
Interpret plot from DiffBind
DiffBind
updated 9 months ago by
Rory Stark
★ 5.1k • written 9 months ago by
Chris
• 0
0
votes
0
replies
350
views
Title in dba.plotProfile
DiffBind
9 months ago
agata17
• 0
0
votes
1
reply
522
views
dba.count with pre-defined regions produced only 10% results
DiffBind
diffbind
updated 9 months ago by
Rory Stark
★ 5.1k • written 10 months ago by
littlefishes20
▴ 10
0
votes
1
reply
575
views
DiffBind dba() in parallel
DiffBind
updated 9 months ago by
Rory Stark
★ 5.1k • written 9 months ago by
Shashank
• 0
1
vote
4
replies
878
views
DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-change
ChIPSeq
DiffBind
updated 9 months ago by
Rory Stark
★ 5.1k • written 9 months ago by
lin.pei26
• 0
1
vote
0
replies
506
views
Fold values in Diffbind
DiffBind
9 months ago
bhandary.8590
▴ 20
2
votes
3
replies
719
views
Getting different differentially accessible peaks between versions
dba.report
DiffBind
written 10 months ago by
jandrade
• 0
0
votes
0
replies
431
views
Help with Diffbind result
DiffBind
10 months ago
Chris
• 0
3
votes
4
replies
1.6k
views
Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric argument to binary operator
DiffBind
10 months ago
Mark
• 0
0
votes
7
replies
1.3k
views
DiffBind - question about showing significant difference on peaks with 0 fold change
DiffBind
11 months ago • updated 9 months ago
Ti
• 0
2
votes
1
reply
527
views
how diffbind count the reads of each peak in each sample?
diffbind
DiffBind
updated 11 months ago by
Rory Stark
★ 5.1k • written 11 months ago by
hfyuan2016
• 0
0
votes
5
replies
1.0k
views
DiffBind - question on the use of filtered or unfiltered input data
DiffBind
updated 10 months ago by
householdelsewhere
• 0 • written 11 months ago by
Oscar
• 0
4
votes
6
replies
846
views
Positive and negative value fold value in ATAC seq using DiffBind
DiffBind
ATACSeq
11 months ago
Chris
• 0
0
votes
1
reply
469
views
Plotting read densities from DiffBind results
Read
density
DiffBind
updated 11 months ago by
Rory Stark
★ 5.1k • written 11 months ago by
bhandary.8590
▴ 20
50 results • Page
1 of 1
Recent ...
Replies
Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Comment: Error in ImportRData
by
ulna
• 0
[@alastair.fortune][1][gorilla tag][2] The most recent version of IsoformSwitchAnalyzeR available on Github (v. 2.01.13) allowed me to reso…
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
ulna
• 0
[@ilayahari][1][basketball stars][2] The complete version of GEOmetadb cannot be downloaded, even though the demo file works. [1]: http…
Votes
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
Awards
• All
Popular Question
to
rproendo
▴ 20
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
Hervé Pagès
16k
Popular Question
to
Gordon Smyth
50k
Locations
• All
Malta,
9 minutes ago
United States,
10 minutes ago
Canada,
12 minutes ago
Denmark,
13 minutes ago
Slovakia,
17 minutes ago
Traffic: 690 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6