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diffSplice
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1
vote
2
replies
819
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Selecting pairs of exons from differentially spliced genes
diffSplice
limma
2.7 years ago
jamie.gearing
▴ 60
2
votes
3
replies
724
views
Reasoning behind weighting of of exon expression values in limma diffSplice function
limma
diffSplice
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
gerberst
• 0
1
vote
3
replies
1.3k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
relathman
▴ 20
5
votes
2
replies
1.2k
views
Warning messages from diffSplice in Limma
limma
diffSplice
updated 6.9 years ago by
Gordon Smyth
50k • written 6.9 years ago by
willj
▴ 30
15
votes
6
replies
3.2k
views
Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR
limma
diffSplice
DEXSeq
updated 7.7 years ago by
Charity Law
▴ 90 • written 7.7 years ago by
maltethodberg
▴ 170
0
votes
0
replies
1.1k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
8.6 years ago
Jose M Garcia Manteiga
▴ 310
6 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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