Bioconductor DiffSplice

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3.5k

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edgeR limma diffSplice DEXSeq

updated 8.1 years ago by Charity Law ▴ 90 • written 8.1 years ago by maltethodberg ▴ 180

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1.5k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.0 years ago by James W. MacDonald 67k • written 7.0 years ago by relathman ▴ 20

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1.3k

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limma diffSplice

updated 7.4 years ago by Gordon Smyth 51k • written 7.4 years ago by willj ▴ 30

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1.2k

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limma diffSplice plotSplice exons annotation

9.1 years ago Jose M Garcia Manteiga ▴ 310

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979

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diffSplice limma

3.1 years ago jamie.gearing ▴ 60

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880

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limma diffSplice

updated 4.0 years ago by Gordon Smyth 51k • written 4.0 years ago by gerberst • 0

6 results • Page 1 of 1

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Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thank you for the additional information! We are currently developing a significantly improved version of `Sublong`. Unfortunately, the old…

Answer: object 'hdac_targets' not found by James W. MacDonald 67k

I believe you missed some steps: ``` ## ----trTargets------------------------------------------------------------- tr_targets <- subse…

Answer: KEGGgraph result difference by alex.pico ▴ 20

I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…

Answer: In the sesame package, what does the estimate output mean from testEnrichment() by James W. MacDonald 67k

It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …

Comment: WGCNA Choosing soft threshold power below R^2 0.8 by Lluís Revilla Sancho ▴ 730

This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …

Votes

C: Usability of ERCC spike-ins in standard RNAseq experiments

A: Usability of ERCC spike-ins in standard RNAseq experiments

A: Using the ERCC spike as a normalization factor for a custom algorithm

Answer: Cannabis and KEGGgraph

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