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diffcyt
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diffcyt - topTable function returns one total significance estimate instead of one per comparison
limma
diffcyt
edgeR
23 months ago
stefanos.bamopoulos
• 0
0
votes
0
replies
687
views
flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.3 years ago
achaillon
• 0
0
votes
0
replies
577
views
diffcyt between cell populations
cytofWorkflow
diffcyt
3.4 years ago
GFM
▴ 20
4
votes
10
replies
1.3k
views
Paired Time course Experiment Design on edgeR between and within groups
edgeR
diffcyt
limma
DifferentialExpression
3.4 years ago
Hajar
• 0
4 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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