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diffsplice
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1
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2
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832
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Selecting pairs of exons from differentially spliced genes
diffSplice
limma
2.7 years ago
jamie.gearing
▴ 60
2
votes
3
replies
753
views
Reasoning behind weighting of of exon expression values in limma diffSplice function
limma
diffSplice
updated 3.6 years ago by
Gordon Smyth
50k • written 3.6 years ago by
gerberst
• 0
1
vote
3
replies
1.4k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
relathman
▴ 20
5
votes
2
replies
1.2k
views
Warning messages from diffSplice in Limma
limma
diffSplice
updated 7.0 years ago by
Gordon Smyth
50k • written 7.0 years ago by
willj
▴ 30
15
votes
6
replies
3.2k
views
Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR
limma
diffSplice
DEXSeq
updated 7.7 years ago by
Charity Law
▴ 90 • written 7.7 years ago by
maltethodberg
▴ 170
0
votes
0
replies
1.1k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
8.7 years ago
Jose M Garcia Manteiga
▴ 310
6 results • Page
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Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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