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Showing :
dispersion
•
reset
2
votes
2
replies
566
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
3 months ago
Linton
• 0
0
votes
3
replies
721
views
Dispersion outliers genes
Dispersion
DESeq2
11 months ago
raya.fai
▴ 60
1
vote
1
reply
889
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 20 months ago by
Michael Love
41k • written 21 months ago by
Julia
▴ 10
1
vote
2
replies
1.2k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
2.4 years ago
m.glymenaki
• 0
4
votes
5
replies
1.2k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
2.9 years ago
Manal
• 0
0
votes
0
replies
551
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
2.9k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 3.2 years ago by
Michael Love
41k • written 3.5 years ago by
Kelen
▴ 10
0
votes
2
replies
807
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
Ruben.wauters
• 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.8 years ago by
onlychainsaw2019
• 0 • written 5.3 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
1.6k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.0 years ago
fiona.dick91
▴ 60
0
votes
5
replies
2.5k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
5.2 years ago
eva-m.petit
• 0
0
votes
4
replies
1.4k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 5.2 years ago by
Michael Love
41k • written 5.3 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.2k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 5.8 years ago by
Ryan C. Thompson
★ 7.9k • written 5.8 years ago by
Mr.RB
▴ 20
8
votes
12
replies
8.7k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Mr.RB
▴ 20
0
votes
13
replies
5.5k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.0 years ago
Frederik Ziebell
▴ 20
0
votes
11
replies
2.2k
views
Strange dispersion plot
deseq2
dispersion
6.2 years ago
Moose123
• 0
5
votes
7
replies
6.7k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 6.5 years ago by
Bernd Klaus
▴ 610 • written 6.5 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.0k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 7.5 years ago by
Ryan C. Thompson
★ 7.9k • written 7.5 years ago by
nancyjwahl7
• 0
4
votes
3
replies
1.6k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 7.8 years ago by
Michael Love
41k • written 7.8 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.3k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.1k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.2k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 8.2 years ago by
Michael Love
41k • written 8.2 years ago by
hans
• 0
3
votes
2
replies
4.0k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
8.7 years ago
meeta.mistry
▴ 30
23 results • Page
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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
by
Gordon Smyth
50k
No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …
Comment: Error EPICv2 ChAMP
by
James W. MacDonald
65k
You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…
Votes
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
Answer: Differentially expressed genes in monocle pseudotime
Answer: DESeq2 - dispersion estimation when there is none
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