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distanceToNearest
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distanceToNearest
rtracklayer
ranges
distanceToNearest
3 months ago
robjohn70000
• 0
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SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
1.0k
views
GenomicRanges distanceToNearest: trouble replicating snp-gene mapping from older version
GenomicRanges
distancetonearest
strandedness
updated 6.0 years ago by
Valerie Obenchain
★ 6.8k • written 6.0 years ago by
shraddha.pai
• 0
2
votes
5
replies
1.2k
views
DistanceToNearest Not giving nearest Range
GRanges
distancetonearest
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
chitsazanalex
▴ 10
0
votes
5
replies
4.4k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich
granges
distancetonearest
function
dataframe
6.5 years ago • updated 6.4 years ago
rbronste
▴ 60
1
vote
14
replies
1.9k
views
DistanceToNearest() error: 'nLnode' and 'nRnode' must be single integers
genomicranges
DistanceToNearest
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.6 years ago by
roladali
▴ 20
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
marka
• 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
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