Showing : dmrcate • reset
0
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9
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18k
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dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.3 years ago by ▴ 170 • written 7.5 years ago by • 0
2
votes
18
replies
4.9k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.8 years ago by • 0 • written 7.9 years ago by ▴ 160
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 11 weeks ago by ▴ 170 • written 7.1 years ago by ★ 2.0k
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by ▴ 120
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by ▴ 170 • written 7.1 years ago by ▴ 10
4
votes
9
replies
3.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 2.5 years ago by ▴ 30 • written 3.9 years ago by ▴ 10
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 8.4 years ago by ▴ 170 • written 8.4 years ago by ▴ 160
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by ▴ 160
0
votes
5
replies
2.1k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.4 years ago par.larsson • 0
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.8 years ago by ▴ 90 • written 6.8 years ago by • 0
2
votes
6
replies
1.8k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 5.9 years ago by ▴ 170 • written 5.9 years ago by • 0
1
vote
8
replies
1.7k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 3.9 years ago by ▴ 170 • written 3.9 years ago by ▴ 40
6
votes
12
replies
1.7k
views
Error when loading DMRcate
DMRcate
14 months ago Bazingastats • 0
2
votes
6
replies
1.7k
views
DMRcate
DMRcate R DMRcatedata Markdown
14 months ago yr542 • 0
2
votes
2
replies
1.6k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 8.3 years ago by ▴ 170 • written 8.3 years ago by • 0
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
5.8 years ago 574233829 • 0
1
vote
2
replies
1.5k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 6.9 years ago by ▴ 170 • written 6.9 years ago by • 0
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 10
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by ▴ 10
1
vote
2
replies
1.4k
views
DMRcate extractRanges error
DMRcate
3.1 years ago macsue.jacques ▴ 10
1
vote
1
reply
1.4k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 8.7 years ago by ▴ 370 • written 8.7 years ago by • 0
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by • 0
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.7 years ago by ▴ 170 • written 4.7 years ago by • 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 16 days ago by ▴ 170 • written 4 months ago by ▴ 10
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 4.7 years ago by ▴ 270 • written 4.7 years ago by • 0
1
vote
2
replies
1.1k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by ▴ 10
8
votes
7
replies
1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 4 months ago by ▴ 30
2
votes
6
replies
1.0k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 11 months ago by ▴ 170 • written 11 months ago by • 0
3
votes
4
replies
1.0k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.5 years ago by ▴ 170 • written 3.6 years ago by ▴ 10
0
votes
1
reply
970
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by • 0
0
votes
1
reply
967
views
conflicts in chromosome number
DMRcate
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by • 0
0
votes
2
replies
934
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
2.6 years ago xie186 • 0
0
votes
1
reply
876
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.5 years ago by 65k • written 2.5 years ago by ▴ 30
0
votes
0
replies
818
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.3 years ago Ahdee ▴ 50
3
votes
4
replies
816
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
6 months ago Jitendra ▴ 10
1
vote
0
replies
806
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
13 months ago jose.ramirez1 ▴ 10
0
votes
2
replies
779
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.7 years ago zh9118 • 0
0
votes
0
replies
735
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.4 years ago Mike ▴ 10
0
votes
1
reply
720
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
votes
0
replies
610
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
14 months ago gilliangoobie • 0
0
votes
5
replies
581
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 5 months ago by 65k • written 5 months ago by ▴ 10
0
votes
1
reply
459
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 8 months ago by ▴ 170 • written 8 months ago by • 0
0
votes
2
replies
425
views
EPIC array hg38 annotation?
minfi DMRcate
9 weeks ago mycetes • 0
3
votes
2
replies
253
views
Question about DMRcate
DMRcate dmrcate
11 weeks ago chuanjiao6 • 0
0
votes
0
replies
118
views
What is the significance of DMR in DMRcate
DMRcate
10 weeks ago chuanjiao6 • 0
0
votes
0
replies
70
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
15 days ago Macsue • 0
49 results • Page 1 of 1
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Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR by prity6459 • 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k
It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR by Gordon Smyth 50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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